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Molecular dynamics simulation of organic crystals: Introducing the CLP-dyncry environment

The CLP-dyncry molecular dynamics (MD) program suite and force field environment is introduced and validated with its ad hoc features for the treatment of organic crystalline matter. The package, stemming from a preliminary implementation on organic liquids (Gavezzotti & Lo Presti, 2019), includes modules for the preliminary generation of molecular force field files from ab initio derived force constants, and for the preparation of crystalline simulation boxes from general crystallographic information, including Cambridge Structural Database CIFs. The intermolecular potential is the atom-atom Coulomb-London-Pauli force field, well tested as calibrated on sublimation enthalpies of organic crystals. These products are then submitted to a main MD module that drives the time integration and produces dynamic information in the form of coordinate and energy trajectories, which are in turn processed by several kinds of crystal-oriented analytic modules. The whole setup is tested on a variety of bulk crystals of rigid, non-rigid and hydrogen-bonded compounds for the reproduction of radial distribution functions and of crystal-specific collective orientational variables against X-ray data. In a series of parallel tests, some advantages of a dedicated program as opposed to software more oriented to biomolecular simulation (Gromacs) are highlighted. The different and improved view of crystal packing that results from joining static structural information from X-ray analysis with dynamic upgrades is also pointed out. The package is available for free distribution with I/O examples and Fortran source codes.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N161 – PubChem

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Radical Decarboxylative Alkylation onto Heteroaromatic Bases with Trivalent Iodine Compounds

Heteroaromatic bases containing nitrogen atoms were easily alkylated with carboxylic acids in the presence of benzene and pentafluorobenzene via radical pathways.Similarly, the alkylation onto heteroaromatic bases was carried out with oxalic acid monoalkyl esters, which were prepared from alcohols and oxalyl dichloride, in the presence of the same trivalent iodine compounds.Moreover, this system was applied to the synthesis of C-nucleosides with the carboxylic acids bearing a sugar moiety.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N447 – PubChem

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Dioxygenation of alkenes

A plethora of natural products exist that contain characteristic vicinal 1,2-diols in their scaffolds. The alkene dihydroxylation methodology developed by Sharpless continues to be the most robust and general method to obtain this important motif. However, the main problem with this transformation is the use of osmium as the catalyst and, since the 1990s, various methods have been developed that employ alternative transition metals. In this chapter, the most important protocols for the racemic and enantioselective dioxygenation of alkenes mediated by metals are summarized, together with recently developed methods that employ chiral nonracemic hypervalent iodine(III) reagents.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N280 – PubChem

Awesome Chemistry Experiments For 6-Amino-2,3-dihydrophthalazine-1,4-dione

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Chemiluminescence of luminol induced by dissolution of oxide-covered aluminum in alkaline aqueous solution

One-electron reduction of oxygen, hydrogen peroxide, potassium peroxodisulphate and potassium peroxodiphosphate was studied during the dissolution of oxide-covered aluminum in alkaline aqueous solution. The production of free oxidizing radicals was monitored by luminol chemiluminescence (CL). It was observed superoxide, hydroxyl, sulphate and phosphate radicals can be generated by the present method. In addition, luminol can be detected below nanomolar level, the linear logarithmic calibration range covering several orders of magnitude of concentration. The metallic aluminum and low-valent aluminum ions are the primary reductants of the system. The electron transfer to the solution is proposed to occur by tunneling through a thin insulating aluminum oxide film at the solid/electrolyte interface in moderately alkaline solutions with simultaneous dissolution of the forming oxide film. In a highly alkaline solution, it is more probable that the oxidation of aluminum species occurs in direct contact of the metallic aluminum with the aqueous solution. In the latter case, short-lived solvated low-valent aluminum ions, hydrogen atom and its deprotonated form, the hydrated electron, can exist as reducing mediators in the chemical reactions in the close vicinity of the dissolving solid/electrolyte interface. Luminol was also observed to exhibit CL under purely reducing conditions produced by a presently unknown excitation pathway.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N591 – PubChem

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Direct Electron Paramagnetic Resonance Observation of Strong Vibronic mixing in a Nonphosphorescent Triplet State. Phthalazine in a Biphenyl Host

The lowest excited triplet state of nonphosphorescent phthalazine was investigated by the time-resolved EPR technique.The hyperfine structure and the angular dependence of the signals observed at 4.2 K in a biphenyl host give rise to very unusual EPR parameters which lead to the conclusion that the T1 state is a heavily mixed state of n?* and ??* character.The lack of phosphorescence is discussed on the basis of the obtained results.

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Phthalazine – Wikipedia,
Phthalazine | C8H6N443 – PubChem

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Tropical and Subtropical Parasitic Diseases: Targets for a New Approach to Virtual Screening

Computational techniques are widely used to reduce costs associated with new drug development with the ability to bind a specific molecular target. These studies need a Brookhaven protein data bank structure sample of the enzyme interaction with an inhibitor of adequate size. In this context, a new computational methodology is postulated to be used when there are no published samples fulfilling this requirements. In this study, 7 compounds, which showed anti-T. cruzi, L. donovani and L. infantum properties, and proved to be inhibitors of their Fe-SOD enzymes, have been theoretically evaluated against related parasites Fe-SOD enzymes, which have been proposed as targets for antiparasitic drugs. This methodology may be applied to similar cases and also to generate starting structures to be used with different CADD methods.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N497 – PubChem

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An overview of aldehyde oxidase: an enzyme of emerging importance in novel drug discovery

Introduction: Given the rising trend in medicinal chemistry strategy to reduce cytochrome P450-dependent metabolism, aldehyde oxidase (AOX) has recently gained increased attention in drug discovery programs and the number of drug candidates that are metabolized by AOX is steadily growing. Areas covered: Despite the emerging importance of AOX in drug discovery, there are certain major recognized problems associated with AOX-mediated metabolism of drugs. Intra- and inter-species variations in AOX activity, the lack of reliable and predictive animal models using the common experimental animals, and failure in the predictions of in vivo metabolic activity of AOX using traditional in vitro methods are among these issues that are covered in this article. A comprehensive review of computational human AOX (hAOX) related studies are also provided. Expert opinion: Following the recent progress in the stem cell field, the authors recommend the application of organoids technology as an effective tool to solve the fundamental problems associated with the evaluation of AOX in drug discovery. The recent success in resolving the hAOX crystal structure can too be another valuable data source for the study of AOX-catalyzed metabolism of new drug candidates, using computer-aided drug discovery methods.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N358 – PubChem

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Fused azole-thiazolines: Via one-pot cyclization of functionalized N-heterocyclic carbene precursors

A one-pot two-step methodology was exploited to synthesize fused thiazoline-azolium salts via reactions of bromoalkyl-azolium salts with KSCN and NaOH. The synthetic feasibility and versatility was demonstrated by the high yield (>80%) preparation of 13 salts with different backbones, linkers and substituents. Using methylpropionato as an N-protecting group, the resulting salts could be further derivatized to their neutral azole-thiazolines. The reaction sequence proceeds via (i) Br ? SCN substitution, (ii) N-heterocyclic carbene formation, (iii) carbene attack of the S atom and CN- displacement in the alkyl-S-CN unit, and (iv) methyl acrylate elimination.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N439 – PubChem

Archives for Chemistry Experiments of 6-Amino-2,3-dihydrophthalazine-1,4-dione

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Chemiluminescence properties of luminol related o-hydroxybenzimidazole analogues: Experimental and DFT based approach to photophysical properties

Novel luminol-isoluminol derivatives containing o-hydroxyphenyl benzimidazole unit were synthesized from aromatic aldehydes and diaminophthalates followed by heating under reflux with hydrazine hydrate. The chemiluminescent properties were studied in hydrogen peroxide, potassium hexacyanoferrate(III) and sodium hydroxide solution. The chemiluminescence properties were compared with the standard luminol and isoluminol systems it was observed that the chemiluminescence properties of the novel derivatives were superior to luminol and isoluminol. Density Functional Theory computations have been used in order to have a greater understanding of the structural, molecular, electronic and photophysical properties. The experimental absorption and emission wavelength values were in good agreement with the computed vertical excitation and emission values.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N546 – PubChem

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Surface enhanced Raman scattering of benzotriazole: A molecular orientational study

Surface enhanced Raman scattering of benzotriazole in aqueous silver sol at pH ?9 has been investigated. The spectra of the molecule at various concentrations were recorded and the maximum enhancement was observed with a 10-5 M solution. From the comparison of the surface enhanced Raman spectra with the conventional Raman spectra and applying ‘surface selection rule’, it is inferred that the molecular ion interacts with the silver sol via the nitrogen atoms of the benzotriazole ring and the molecule assumes a near ‘end-on’ orientation.

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Reference£º
Phthalazine – Wikipedia,
Phthalazine | C8H6N445 – PubChem